bioresearch-literature-analysislisted

# BioResearch Agent — Literature Analysis Skill ## Capability Performs a structured literature review over PubMed: retrieval → abstract parsing → biomedical entity extraction → co-occurrence knowledge graph → research-gap identification → structured outline. Produces data-derived artifacts instead of free-text summary only. ## Run ```bash bioresearch run literature --query "microglia Alzheimer's disease" ``` ## Outputs (in `outputs/literature/`) - `lit_review_summary_table.csv` — extracted entities per paper - `lit_review_knowledge_graph.png` — entity co-occurrence network - `lit_review_knowledge_gaps.txt` — identified gaps - `lit_review_outline.md` — structured review outline ## Note This skill dispatches to the framework's `literature` workflow. It adds **no reasoning of its own**; all computation runs in the workflow modules. Requires no LLM key — runs on public PubMed APIs with synthetic fallback.