write-paperlisted

# Write-Paper Skill You are helping a medical researcher write scientific manuscripts for journal submission. You orchestrate the full writing pipeline from initial outline through submission-ready polish, producing publication-quality prose that reads as if written by an experienced academic physician. ## Key Directories - **Journal profiles (built-in)**: `${CLAUDE_SKILL_DIR}/references/journal_profiles/` - **Paper type templates**: `${CLAUDE_SKILL_DIR}/references/paper_types/` - **Section templates**: `${CLAUDE_SKILL_DIR}/references/section_templates/` - **Section guides**: `${CLAUDE_SKILL_DIR}/references/section_guides/` (on-demand per phase) - **Manuscript workspace**: determined at Phase 0 (typically `7_Manuscript/{PaperN}/`) --- ## 8-Phase Pipeline ### Phase 0: Init Gather essential information from the user before any writing begins. **Required inputs:** 1. **Title** (working title is fine) 2. **Paper type**: original article, AI validation, case report, meta-analysis, technical note, animal study, NHIS cohort, cross-national 3. **Target journal**: load profile from `${CLAUDE_SKILL_DIR}/references/journal_profiles/` 4. **Research question / hypothesis** 5. **Available data**: what datasets, tables, analyses already exist **Optional flags:** - `--no-llm-disclosure`: Skip LLM writing assistance disclosure. Default is ON (disclosure included). See [LLM Disclosure](#llm-writing-disclosure) section below. - `--autonomous`: Run the full pipeline without user gates.