reindexlisted

# Reindex Rebuild the cqs search index and compare stats. ## Process 1. **Before stats**: Run `cqs stats` and capture output (chunk count, note count, HNSW status) 2. **Reindex**: - Default: `cqs index` (incremental — only re-embeds changed files) - With `--force` argument: `cqs index --force` (full rebuild) 3. **After stats**: Run `cqs stats` again 4. **Compare**: Show before/after diff: - Chunks: added, removed, unchanged - Notes: count change - HNSW vectors: count change - Call graph: call count change 5. **Verify**: Run a quick search to confirm index is working: - `cqs "parse source file"` — should return results - If no results, something is wrong — investigate ## When to use - After significant code changes - After editing `docs/notes.toml` manually (if `cqs watch` isn't running) - After switching branches with different file sets - When search results seem stale or wrong