research-architect-audit

# Research Architect Audit Audit the available artifact trail and route each problem to the artifact that owns the decision. Do not turn missing evidence or provenance into a pass. ## Inputs and shared resources Read all available artifacts under `paper_output/`, especially the project configuration, terminology/object ledger, exemplar profile/adaptation, selected or confirmed spine, study design, evidence bank, claim register, display-system plan, evidence-display map, citation bank, promise-resolution map, blueprint, rationale matrix, and draft. Read `../research-architect/references/quality-gates.md`. Use `../research-architect/templates/audit_report.md` as the output structure. Create: ```text paper_output/audit_report.md paper_output/revision_queue.md paper_output/final_artifact_manifest.md paper_output/run_manifest.json paper_output/pipeline_state.json ``` ## Revised-draft and standalone path Accept an external draft or a partial `paper_output/` directory. If intake has not happened, collect the draft location, project scope, and constraints first. Record each missing upstream artifact as an `intake_debts.md` entry with its affected claim/gate, severity, and next owner. Audit the material that exists; label debts `BLOCKED` or scoped limitations instead of inventing a clean trail. Use the audit to review a draft gate by gate: target-reference logic, adaptation, spine, feasibility, literature grounding, design, evidence, displays, citations, independence, complet...