hypothesis-deep-verificationlisted
Install: claude install-skill panjose/Co-Scientist
# hypothesis-deep-verification
Goal:
- Run the assumption decomposition and deep verification review for a hypothesis.
Inputs:
- `research_plan/RESEARCH_PLAN.json`
- `hypotheses/<id>/HYPOTHESIS.json`
- `literature/queries/<query_id>/EVIDENCE_BUNDLE.json` as an `EvidenceBundleContract` when external evidence is needed to judge a core assumption
- optional prior review artifacts for calibration
Outputs:
- `hypotheses/<id>/REVIEW/DEEP_VERIFICATION.json`
- `literature/queries/<query_id>/*` search bridge artifacts when a new evidence query is required
Context Loading:
- Open `skills/shared-references/schema-index.md`.
- Open `skills/shared-references/literature-search-contract.md`.
- Open `skills/shared-references/codex-reviewer-routing.md` before using any optional Codex reviewer subagent route.
- Read `packages/agent_contracts/literature.py` before building or consuming search bridge artifacts.
- Read `research_plan/RESEARCH_PLAN.json` for the active goal and boundaries.
- Read `hypotheses/<id>/HYPOTHESIS.json`.
- If previous review artifacts exist, use them to focus decomposition on already-suspect links, but still perform an independent structural check.
Execution Prompt Contract:
- System Intent:
- You are the structural verification layer for one hypothesis.
- Required Reasoning Focus:
- Decompose the hypothesis into core assumptions.
- Break each assumption into independently judgeable sub-assumptions where useful.
- For assumptions that depend on external