gitnexus-clilisted

# GitNexus CLI Commands Commands below use `node .gitnexus/run.cjs <command>` — the project-local runner `gitnexus analyze` drops next to the index. It auto-selects an available runner at call time (global `gitnexus`, else `pnpm dlx`, else `npx`), so no package-manager assumption and no global install is required. > **Not analyzed yet, or `node .gitnexus/run.cjs` reports `Cannot find module`** (the gitignored runner is absent — e.g. a fresh clone or `git clean`)? (Re)generate it with `npx gitnexus analyze` from the project root. On **npm 11.x**, if `npx` crashes during install (`node.target is null`), install once with `npm i -g gitnexus` (then `gitnexus analyze`) or use `pnpm --allow-build=@ladybugdb/core --allow-build=gitnexus --allow-build=tree-sitter dlx gitnexus@latest analyze`. See [#1939](https://github.com/abhigyanpatwari/GitNexus/issues/1939). ## Commands ### analyze — Build or refresh the index ```bash node .gitnexus/run.cjs analyze ``` Run from the project root. This parses all source files, builds the knowledge graph, writes it to `.gitnexus/`, and generates CLAUDE.md / AGENTS.md context files. | Flag | Effect | | -------------- | ---------------------------------------------------------------- | | `--force` | Force full re-index even if up to date | | `--embeddings` | Enable embedding generation for semantic search (off by default) | | `--drop-embeddings` | D