gtars

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Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.

AI & Automation 31,973 stars 3177 forks Updated today MIT

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Skill Content

# Gtars Gtars provides native Rust implementations, Python bindings, and a feature-gated `gtars` binary for genomic interval and reference-sequence work. Start with the bundled local inspectors; call upstream code only after the data contract, provenance, resource bounds, and side effects are explicit. ## Verified snapshot (2026-07-23) - Python: [`gtars==0.9.2`](https://pypi.org/project/gtars/), released 2026-06-17, `Requires-Python >=3.10`. - Rust meta-crate: [`gtars=0.9.0`](https://crates.io/crates/gtars), released 2026-06-15. Its default feature set is empty. - CLI crate/binary: [`gtars-cli=0.9.0`](https://crates.io/crates/gtars-cli); the installed binary is named `gtars`. - Direct refget crate: [`gtars-refget=0.9.1`](https://crates.io/crates/gtars-refget), released 2026-06-17. `gtars=0.9.0` itself pins its component release set, which includes refget 0.9.0. - Upstream intentionally versions workspace crates, Python bindings, and CLI independently. Do not assume matching numbers mean matching artifacts. - The published docs changelog stops at 0.5.1. API examples here were checked against the 0.9.2 Python stubs/runtime and the `v0.9.0` CLI/Rust source. The `license: MIT` field covers this skill. Published `gtars` crates declare MIT, while the GitHub repository currently displays BSD-2-Clause at the root; verify the exact artifact's license before redistribution. ## Native-code trust gate and exact pins The Python wheel contains a PyO3 native extension. C...

Details

Author
K-Dense-AI
Repository
K-Dense-AI/scientific-agent-skills
Created
9 months ago
Last Updated
today
Language
Python
License
MIT

Integrates with

GitHub · DevTools Redis · Database

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