alphafold-predictor

# AlphaFold Predictor Skill ## Purpose Enable AlphaFold protein structure prediction with confidence assessment and model analysis. ## Capabilities - Structure prediction execution - pLDDT confidence scoring - PAE analysis - Multi-chain complex prediction - Template-based refinement - ColabFold integration ## Usage Guidelines - Review pLDDT scores for prediction confidence - Analyze PAE for domain boundaries - Predict complexes for multi-protein assemblies - Use templates when homologs exist - Validate predictions against experimental data - Document model versions and parameters ## Dependencies - AlphaFold2 - ColabFold - RoseTTAFold ## Process Integration - Protein Structure Prediction (protein-structure-prediction) - Molecular Docking and Virtual Screening (molecular-docking)