cellranger-processor

Solid

Cell Ranger skill for 10X Genomics single-cell data processing

AI & Automation 814 stars 53 forks Updated today MIT

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Quality Score: 93/100

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Skill Content

# CellRanger Processor Skill ## Purpose Provide Cell Ranger capabilities for 10X Genomics single-cell data processing including demultiplexing and alignment. ## Capabilities - BCL to FASTQ conversion - Cell barcode demultiplexing - UMI counting - Feature barcode processing - Aggregate sample analysis - Loupe Browser file generation ## Usage Guidelines - Configure sample sheets accurately - Validate cell counts against expectations - Review QC metrics from web summary - Aggregate samples for combined analysis - Generate Loupe files for visualization - Document reference versions ## Dependencies - Cell Ranger - STARsolo ## Process Integration - Single-Cell RNA-seq Analysis (scrnaseq-analysis) - Spatial Transcriptomics Analysis (spatial-transcriptomics)

Details

Author: a5c-ai
Repository: a5c-ai/babysitter
Created: 4 months ago
Last Updated: today
Language: JavaScript
License: MIT

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