kraken2-taxonomic-classifier

# Kraken2 Taxonomic Classifier Skill ## Purpose Provide Kraken2 taxonomic classification for rapid metagenomic read assignment. ## Capabilities - k-mer based classification - Custom database creation - Confidence score filtering - Bracken abundance estimation - Multi-sample reporting - Memory-efficient operation ## Usage Guidelines - Build or download appropriate databases - Set confidence thresholds for accuracy - Use Bracken for abundance estimation - Generate reports for visualization - Consider memory requirements - Document database versions ## Dependencies - Kraken2 - Bracken - Centrifuge ## Process Integration - Shotgun Metagenomics Pipeline (shotgun-metagenomics) - 16S rRNA Microbiome Analysis (16s-microbiome-analysis)