qiime2-microbiome-analyzer

Solid

QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis

AI & Automation 814 stars 53 forks Updated today MIT

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Skill Content

# QIIME2 Microbiome Analyzer Skill ## Purpose Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis. ## Capabilities - Demultiplexing and denoising (DADA2) - Taxonomic classification - Alpha diversity metrics - Beta diversity analysis - Differential abundance testing - Phylogenetic analysis ## Usage Guidelines - Use DADA2 for denoising amplicon data - Select appropriate taxonomic classifier - Calculate diversity metrics with rarefaction - Visualize beta diversity with ordination - Test differential abundance appropriately - Document pipeline parameters ## Dependencies - QIIME2 - DADA2 - phyloseq ## Process Integration - 16S rRNA Microbiome Analysis (16s-microbiome-analysis)

Details

Author: a5c-ai
Repository: a5c-ai/babysitter
Created: 4 months ago
Last Updated: today
Language: JavaScript
License: MIT

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