singularity-container-manager

# Singularity Container Manager Skill ## Purpose Provide Singularity container management for HPC-compatible containerized execution. ## Capabilities - Container building from recipes - Registry pull and caching - Bind mount configuration - GPU passthrough - MPI integration - Security compliance for HPC ## Usage Guidelines - Build containers from definition files - Cache containers for repeated use - Configure bind mounts appropriately - Enable GPU for accelerated workloads - Integrate with MPI for parallel computing - Ensure HPC security compliance ## Dependencies - Singularity/Apptainer - Docker - BioContainers ## Process Integration - Reproducible Research Workflow (reproducible-research) - All analysis pipelines