string-network-analyzer

# STRING Network Analyzer Skill ## Purpose Provide STRING protein interaction network analysis for functional enrichment and network visualization. ## Capabilities - Protein-protein interaction queries - Network clustering - Functional enrichment analysis - Cytoscape integration - Network visualization - Interaction confidence scoring ## Usage Guidelines - Query interactions with appropriate confidence thresholds - Cluster networks to identify modules - Perform functional enrichment on modules - Visualize networks with meaningful layouts - Export to Cytoscape for advanced visualization - Document confidence thresholds and filters ## Dependencies - STRING-db - Cytoscape - NetworkX ## Process Integration - Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline) - Multi-Omics Data Integration (multi-omics-integration)