paper-writer

# Paper Writer Skill Full-pipeline academic paper writing assistant. From literature search to submission-ready manuscript. ## Overview This skill manages the entire paper writing workflow: ``` [Discovery] → Literature Search → Outline → Tables/Figures → Draft → Humanize → References → Quality Review → [Adversarial Review] → Pre-Submission → [Revision] → [Post-Acceptance] → [Rejection → Resubmission] ``` Each paper is a **project directory** containing structured Markdown files for every section, a literature matrix, and quality checklists. ### AI-for-Science Operating Model This skill is not only a *manuscript factory* (write → format → submit). It is a *research engine* that wraps the writing pipeline in a discovery loop and names the two things only a human can supply. **Before doing anything else, read `~/.claude/skills/paper-writer/references/ai-for-science-model.md`** — it defines: - **The two human-sovereign inputs.** 💡 **IDEA** (what is worth asking, what it means, what is ethical) and 📊 **DATA** (real, IRB-approved, never machine-originated). AI proposes and executes everything else at full power; the human owns exactly these two gates. AI must never originate a data point, participant, or result. - **The loop.** Phase −1 Discovery (hypothesis → novelty → design → pre-registration lock) feeds the existing pipeline; Phase 6.5 Adversarial Review red-teams the central claim before any journal sees it. A red-team KILL sends the project back to Dis...