research-wiki

# Research Wiki: Persistent Research Knowledge Base Subcommand: **$ARGUMENTS** ## Overview The research wiki is a persistent, per-project knowledge base that accumulates structured knowledge across the entire ARIS research lifecycle. Unlike one-off literature surveys that are used and forgotten, the wiki **compounds** — every paper read, idea tested, experiment run, and review received makes the wiki smarter. Inspired by [Karpathy's LLM Wiki pattern](https://gist.github.com/karpathy/442a6bf555914893e9891c11519de94f): compile knowledge once, keep it current, don't re-derive on every query. ## Core Concepts ### Four Entity Types | Entity | Directory | Node ID format | What it represents | |--------|-----------|---------------|--------------------| | **Paper** | `papers/` | `paper:<slug>` | A published or preprint research paper | | **Idea** | `ideas/` | `idea:<id>` | A research idea (proposed, tested, or failed) | | **Experiment** | `experiments/` | `exp:<id>` | A concrete experiment run with results | | **Claim** | `claims/` | `claim:<id>` | A testable scientific claim with evidence status | ### Typed Relationships (`graph/edges.jsonl`) | Edge type | From → To | Meaning | |-----------|-----------|---------| | `extends` | paper → paper | Builds on prior work | | `contradicts` | paper → paper | Disagrees with results/claims | | `addresses_gap` | paper\|idea → gap | Targets a known field gap | | `inspired_by` | idea → paper | Idea sourced from this paper | | `tested_by` ...