tuoxie2046
UserA curated collection of Claude Code skills & plugins for academic research paper workflows — figures, writing, polishing, peer-review simulation, multi-source literature search (MCP), and full research→write→review pipelines.
Categories
Indexed Skills (18)
nature-response
Draft, audit, or revise point-by-point reviewer response letters for Nature-family manuscript revisions. Use when the user provides reviewer comments, editor decision letters, revision notes, response drafts, or asks how to respond to major/minor revision requests, rebuttal letters, response to reviewers, peer-review reports, 审稿意见回复, 逐点回复, 修回信, 大修回复, 小修回复, or 如何回复 reviewer. Also trigger on general peer-review response needs during academic writing/revision even without the word "Nature", such as replying to reviewers for any journal, writing a rebuttal/response letter, handling revision comments, and Chinese phrasings like 回复审稿人、审稿回复、返修、 修改稿回复、写rebuttal、回应审稿意见、应对审稿.
drawio-skill
Use when the user requests diagrams, flowcharts, architecture diagrams, ER diagrams, UML / sequence / class diagrams, network topology, ML/DL model figures (Transformer/CNN/LSTM), mind maps, or any visualization. Also use proactively when explaining systems with 3+ components, complex data flows, or relationships that benefit from visual representation. Best suited when the diagram needs custom styling, rich shape vocabulary, swimlanes, or exportable images (PNG/SVG/PDF/JPG). Generates .drawio XML and exports locally via the native draw.io desktop CLI.
academic-paper-reviewer
Multi-perspective academic paper review with dynamic reviewer personas. Simulates 5 independent reviewers (EIC + 3 peer reviewers + Devil's Advocate) with field-specific expertise. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration modes. Triggers on: review paper, peer review, manuscript review, referee report, review my paper, critique paper, simulate review, editorial review, calibrate reviewer, reviewer calibration, measure reviewer accuracy.
academic-paper
12-agent academic paper writing pipeline. 10 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, AI disclosure, 寫論文, 學術論文, 引導我寫論文, 審查意見.
academic-pipeline
Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory integrity verification, two-stage peer review, and reproducible quality gates. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow.
deep-research
Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 7 modes: full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題.
nature-academic-search
Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion) via MCP tools (PubMed, CrossRef, arXiv, Scopus, ScienceDirect). Use when the user needs coordinated multi-step literature workflows beyond a single MCP call. Also trigger on general literature-search needs during academic writing even without the word "Nature", such as searching for papers/literature, doing a literature review, verifying a citation, converting citation files, and Chinese phrasings like 文献检索、查文献、找文献、 文献综述检索、查论文、引文核对、参考文献管理、文献去重.
nature-citation
Add strict Nature/CNS citations to manuscript text by splitting long passages into citable segments, searching only accepted flagship and subjournal titles from Nature Portfolio, the AAAS Science family, and Cell Press, filtering by publication time range, and exporting one reference-manager-ready output by default. Use this skill whenever the user asks to input text and automatically get references, add citations to a paragraph/manuscript, find Nature-series or CNS support for statements, create text-to-reference correspondence, "分段引用", "自动给出引用", "Nature系列引用", "CNS及子刊", "支撑文献", "补引用", "找引用", or export EndNote/RIS/ENW/Zotero RDF. Also trigger on general academic-writing citation needs even without the word "Nature", such as adding references while writing a paper, finding sources/literature for a claim, building a reference list, citation/referencing for academic writing, and Chinese phrasings like 学术写作引用、写论文加引用、写paper找文献、加参考文献、配文献、引用文献、文献支撑.
nature-data
Prepare, audit, or revise Nature-ready Data Availability statements, data repository plans, dataset citations, and FAIR metadata checklists for manuscripts. Use when the user asks about Nature data availability, research data sharing, repository selection, accession numbers, restricted or sensitive data, source data, supplementary datasets, DataCite-style dataset references, FAIR metadata for academic publication, or Chinese-to-English data availability wording for Chinese-speaking authors preparing Nature-family submissions. Also trigger on general academic-writing data needs even without the word "Nature", such as writing a data availability statement for any journal, code/data sharing sections, repository selection while writing a paper, and Chinese phrasings like 数据可用性声明、数据可用性、 数据共享、代码可用性、学术写作数据声明、写数据声明、数据存放、数据仓库选择.
nature-figure
Submission-grade Nature/high-impact journal figure workflow for Python or R. Use whenever the user asks to create, revise, audit, or polish manuscript figures, multi-panel scientific plots, figures4papers-style matplotlib plots, or journal-ready SVG/PDF/TIFF outputs, especially for Nature-family or other high-impact journals. Before plotting, define the figure's conclusion, evidence logic, export needs, and review risks. If the user has not chosen Python or R, ask "Python or R?" and stop. Use only the selected backend for figure generation, previewing, exporting, and QA. Supports matplotlib/seaborn and ggplot2/patchwork/ComplexHeatmap. Not for dashboards or Illustrator/Figma-first infographics. Also trigger on general academic-writing figure needs even without the word "Nature", such as making figures/plots for a paper, scientific/academic plotting, data visualization for a manuscript, and Chinese phrasings like 论文配图、学术写作配图、科研绘图、科研作图、画图、作图、出图、论文图表、可视化.
nature-paper2ppt
Build a complete but efficient Nature-style Chinese PPTX presentation from a scientific paper, preprint, PDF, article text, abstract, figure legends, or reading notes. Use this skill whenever the user asks to make slides/PPT/PPTX for journal club, group meeting, paper sharing, thesis seminar, lab meeting, department report, or academic presentation from a research paper, not only medical papers. It identifies the paper type and argument, selects only the figures needed for the story, writes Chinese slide content and speaker notes, creates the actual .pptx deck, and runs an explicit self-review/corrective revision loop focused on figure quality, text overflow prevention, and non-template visual design before delivery. Also trigger on general academic-presentation requests even without the word "Nature", such as turning a paper into slides, building an academic talk deck, conference/defense presentations, and Chinese phrasings like 论文做PPT、论文汇报、组会PPT、文献汇报、学术汇报、做幻灯片、讲paper、读书报告PPT.
nature-polishing
Polish, restructure, or translate academic prose into Nature-leaning English using writing-strategy principles, curated Nature/Nature Communications article patterns, and phrase-level support from Academic Phrasebank. Use whenever the user asks to polish a manuscript paragraph, abstract, introduction, results, discussion, conclusion, title, methods section, or Chinese academic draft for publication-quality English. Also covers LaTeX layout/typesetting (排版) fixes — loose or sparse pages, stranded section headings, figures that don't fill the page or split across pages, "Float too large", multi-panel figure arrangement, and Supplementary Information that looks empty — via references/latex-layout.md. Also trigger on general academic/scientific writing requests even without the word "Nature", including academic writing, scientific writing, SCI/paper writing, English manuscript polishing, language editing, proofreading, and Chinese phrasings such as 学术写作、科研写作、论文润色、写paper、SCI写作、英文论文润色、语言润色、润色、改写、学术英语、英文写作.
nature-reader
Build full-paper Chinese-English side-by-side, figure/table-aware, source-grounded Markdown readers for journal or conference papers from PDF, DOI, arXiv, publisher HTML, or pasted text. Use whenever the user asks to translate or read a paper, make 中英文对照/原文对照/全文翻译解读, extract figures or tables into the right positions, preserve figure/table placement near relevant prose, or keep exact source anchors for every block. This skill must not degrade into a summary-only output unless the user explicitly asks for a summary. Also trigger on general paper-reading and translation requests even without the word "Nature", such as reading/translating an academic paper, literature reading, understanding a paper, and Chinese phrasings like 读论文、精读论文、论文翻译、文献翻译、文献阅读、学术阅读、帮我读这篇文章、翻译这篇paper.
nature-reviewer
Simulate a Nature-style reviewer assessment from the referee perspective rather than an author rebuttal. Use when the user wants a pre-submission review, reviewer report, peer-review style critique, novelty/significance/technical soundness assessment, reviewer-style manuscript evaluation, 审稿人视角评估, 预审稿意见, or Nature reviewer report. Return 3 reviewer reports plus a cross-review synthesis, grounded only in the local Nature reviewer source basis. Also trigger on general pre-submission review requests during academic writing even without the word "Nature", such as getting a mock peer review for any journal, critiquing a draft as a reviewer would, assessing novelty/rigor before submission, and Chinese phrasings like 审稿人视角、模拟审稿、预审、帮我审一下论文、投稿前自审、审稿意见模拟、找论文问题.
nature-writing
Draft, restructure, or plan Nature-style manuscript sections from author-provided claims, results, figures, notes, or Chinese drafts. Use when the user wants to write or rebuild an abstract, introduction, related-work, method, experiments, discussion, conclusion, title, or full manuscript argument rather than only polish finished prose. Also trigger on general academic-writing requests even without the word "Nature", such as writing a paper from scratch, drafting a manuscript/section, structuring a paper, and Chinese phrasings like 学术写作、科研写作、论文写作、写论文、写paper、SCI写作、帮我写论文、搭论文框架、起草论文、写引言/摘要/讨论.
paper-framework-figure-studio-pro
Human-in-the-loop research-paper framework figure workflow from S0-PAPER-FOUNDATION through terminal S5-CANDIDATE-IMAGE. Use for paper-grounded architecture, pipeline, method overview, agent workflow, system/data-flow, and mechanism figures with generated raster first-round/formal candidates, reviewer-first-glance layout gates, semantic-vs-visual graph separation, edge-label-first carried-variable contracts, internal visual motif planning, cumulative checkpoint recovery, and a strict human-decision boundary after S5. Version 3.2.15b keeps S2 and S5 as image-generation-only public stages, preserves the strict human-decision boundary after terminal S5 candidate generation, adds hard prompt-index/candidate/artifact/checkpoint ID coherence, enforces strict source-grounded modular prompt contracts across all generic projects, places the origin/reply principles at the top of the controller, requires response-time cumulative checkpoint zip validation for every workflow text reply, requires preference-led second-roun
paper-polish-pipeline
Staged, diagnosis-driven academic paper polishing pipeline (bilingual 中文/English). Use to revise a paper from rough draft to final submission across ordered stages: diagnose first, then optimize section by section, derive abstract/contributions from the revised body, polish the language to reduce AI-sounding phrasing, and run a pre-submission/defense risk check. Enforces research-integrity guardrails: no fabricated references/data, no overclaiming, correlation is not causation, limited samples are not universal laws, and missing information is flagged not invented. Works for thesis, journal, course paper, and grant proposal. Also trigger on Chinese phrasings like 论文润色、论文修改、论文诊断、 降AI味、降低AI味、引言重构、文献综述优化、研究方法规范、结果讨论深化、摘要提炼、 创新点提炼、答辩问题预测、投稿前检查、终稿风险检查、毕业论文修改、期刊论文润色.
research-paper-writing
Improve academic paper writing quality for ML/CV/NLP-style papers with clear section structure, paragraph flow, and reviewer-facing presentation. Use when drafting or revising Abstract, Introduction, Related Work, Method, Experiments, or Conclusion; polishing figures/tables; checking claim-support alignment; or performing self-review before submission.
Bio shown is the top-scored skill's repo description as a fallback — real GitHub bios land in a future update.