integrate

# /integrate — Thesis Integration Skill ## Purpose After completing a reading session, this skill weaves key arguments, quotes, and concepts from reading notes into the thesis manuscript. It ensures new material is placed in the right chapter and section, with proper attribution and minimal disruption to existing structure. ## Trigger Words This skill activates on: `integrate`, `weave in`, `add to thesis`, `/integrate`. ## Workflow 1. **Scan the specified notes file(s)** for the `## Thesis Connections` table and `## Key Arguments` section. If the user does not specify which notes file, ask. If the user says "all pending", scan all notes files with `Status: completed` (not yet `integrated`). 2. **Read target chapter files** in `chapters/` to identify insertion points. Use Grep to find relevant sections, existing citations of the same author, and thematic paragraphs where the new material fits. 3. **Present an integration plan** as a table. Do not execute any changes yet. ``` ## Integration Plan: {Author} -- {Title} | # | Source Concept | Chapter | Section | Insertion Type | Preview | |---|---------------|---------|---------|----------------|---------| | 1 | {concept} | Ch{N} | {section ref} | new paragraph / expand existing / add citation / add footnote | {first 10 words of proposed text} | Estimated word count delta: +{N} words across {N} chapters. Proceed? (yes / edit plan / cancel) ``` 4. **Wait for user approval.** The user may: - Say...