integrate

# /integrate — Thesis Integration Skill ## Purpose After completing a reading session, this skill weaves key arguments, quotes, and concepts from reading notes into the thesis manuscript. It ensures new material is placed in the right chapter and section, with proper attribution and minimal disruption to existing structure. ## Trigger Words This skill activates on: `integrate`, `weave in`, `add to thesis`, `/integrate`. ## Workflow 1. **Scan the specified notes file(s)** for the `## Thesis Connections` table and `## Key Arguments` section. If the user does not specify which notes file, ask. If the user says "all pending", scan all notes files with `Status: completed` (not yet `integrated`). When `guards/` is present, first run `npm --prefix guards run lint:notes -- {files}`: report any file that fails the contract lint and exclude it from the plan explicitly — never silently skip a non-conforming file. A source whose notes carry `Evidence status: abstract_only` or `metadata_only` must not be woven in as supporting evidence; flag it instead. 2. **Read target chapter files** in `chapters/` to identify insertion points. Use Grep to find relevant sections, existing citations of the same author, and thematic paragraphs where the new material fits. 3. **Present an integration plan** as a table. Do not execute any changes yet. ``` ## Integration Plan: {Author} -- {Title} | # | Source Concept | Chapter | Section | Insertion Type | Preview | |---|---------------|...